See my Google Scholar page for more information about the publications.

  1. Bray SM, Hämälä T, Zhou M, Busoms S, Fischer S, Desjardins SD, Mandáková T, Moore C, Mathers TC, Cowan L, Monnahan P, Koch J, Wolf EM, Lysak MA, Kolář F, Higgins JD, Koch MA & Yant L (2024). Kinetochore and ionomic adaptation to whole- genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids Cell Reports 43: 114576.

  2. Hämälä T, Moore C, Cowan L, Carlile M, Gopaulchan D, Brandrud MK, Birkeland S, Loose M, Kolář F, Koch MA & Yant L (2024). Impact of whole-genome duplications on structural variant evolution in Cochlearia. Nature Communications 15: 5377.

  3. Winters NP, Wafula EK, Knollenberg BJ, Hämälä T, Timilsena PR, Perryman M, Ralph PE, Prewitt S, Leandro-Muñoz LE, Delgadillo-Duran DA, Altman NS, Tiffin P, Maximova SN, dePamphilis CW, Marden JH & Guiltinan MJ (2024). A combination of conserved and diverged responses underlies Theobroma cacao’s defense response to Phytophthora palmivora. BMC Biology 22: 1-24.

  4. Epstein B, Burghardt LT, Heath KD, Grillo MA, Kostanecki A, Hämälä T, Young NE & Tiffin P (2023). Combining GWAS and population genomic analyses to characterize coevolution in a legume-rhizobia symbiosis. Molecular Ecology 23: 3798-3811.

  5. Hämälä T, Ning W, Kuittinen H, Aryamanesh N & Savolainen O (2022). Environmental response in gene expression and DNA methylation reveals factors influencing the adaptive potential of Arabidopsis lyrata. eLife 11: e83115.

  6. Hämälä T, Wafula EK, Guiltinan MJ, Ralph PE, dePamphilis CW & Tiffin P (2021). Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree. PNAS 118: e2102914118.

    The paper was chosen as the cover article in PNAS

  7. Takou M, Hämälä T, Koch E, Steige KA, Dittberner H, Yant L, Genete M, Sunyaev S, Castric V, Vekemans X, Savolainen O & de Meaux J (2021). Maintenance of adaptive dynamics and no detectable load in a range-edge out-crossing plant population. Molecular Biology and Evolution 38: 1820-1836.

  8. Hämälä T & Tiffin P (2020). Biased gene conversion constrains adaptation in Arabidopsis thaliana. Genetics 215: 831-846.

  9. Hämälä T, Gorton AJ, Moeller AD & Tiffin P (2020). Pleiotropy facilitates local adaptation to distant optima in common ragweed (Ambrosia artemisiifolia). PLOS Genetics 16: e1008707.

  10. Hämälä T, Guiltinan MG, Marden JH, Maximova S, dePamphilis C & Tiffin P (2020). Gene expression modularity reveals footprints of polygenic adaptation in Theobroma cacao. Molecular Biology and Evolution 1: 110-123.

  11. Hämälä T & Savolainen O (2019). Genomic patterns of local adaptation under gene flow in Arabidopsis lyrata. Molecular Biology and Evolution 36: 2557-2571.

  12. Mattila TM, Laenen B, Horvath R, Hämälä T, Savolainen O & Slotte T (2019). Impact of demography on linked selection in two outcrossing Brassicaceae species. Ecology and Evolution 9: 9532-9545.

  13. Hämälä T, Mattila TM & Savolainen O (2018). Local adaptation and ecological differentiation under selection, migration, and drift in Arabidopsis lyrata. Evolution 72: 1373-1386.

  14. Hämälä T, Mattila TM, Leinonen PH, Kuittinen H & Savolainen O (2017). Role of seed germination in adaptation and reproductive isolation in Arabidopsis lyrata. Molecular Ecology 26: 3484–3496.

Updated: 12 August, 2024